A Python tool for finding outliers in RNA-Seq gene expression count data using SVD/OHT OutSingle has been tested on Windows (11). Note that OutSingle is still in alpha stage, so encountering bugs while running it is expected. If you use OutSingle in your research you can cite our paper:Edin Salkovic,…
Use Newton’s method, coordinate descent, and METIS clustering to solve the L1 regularized Gaussian MLE inverse covariance matrix estimation problem. https://cran.r-project.org/web/packages/BigQuic/index.html
Motivation: Current methods for predicting protein residue contacts are valuable but incomplete and do not fully agree. We developed a new method, COUSCOus, that combines advanced statistical techniques to improve accuracy. Our method consistently outperforms the established PSICOV tool across multiple benchmarks and independent tests. This demonstrates that superior statistical…
MotivationProtein solubility plays a vital role in pharmaceutical research and production yield. For a given protein, the extent of its solubility can represent the quality of its function, and is ultimately defined by its sequence. Thus, it is imperative to develop novel, highly accurate in silico sequence-based protein solubility predictors.…
MotivationQCRI deep learning models for crystallization propensity prediction, DeepCrystal and B, BCrystal is ready to compute. How to get started?Perform the following steps to signup:1. Navigate to the Sign Up tab in the top navigation bar.2. Fill in your details and press register, a registration confirmation mail will be sent,…
QCRI, Qatar University (QU), Hamad Medical Corporation (HMC), Primary Health Care Corporation (PHCC), Complutense University – Madrid in Spain, University of Oviedo in Spain, Allied Hospital of Faisalabad in Pakistan, and McGill University in Canada has joined forces to develop a generalizable oral cancer AI screening system using multi-ethnic cohorts…